IL_6ZJ3_195
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- GUUAGUAC*GGAACAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_195 not in the Motif Atlas
- Homologous match to IL_5TBW_377
- Geometric discrepancy: 0.2547
- The information below is about IL_5TBW_377
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6ZJ3|1|LO|G|71
6ZJ3|1|LO|U|72
6ZJ3|1|LO|U|73
6ZJ3|1|LO|A|74
6ZJ3|1|LO|G|75
6ZJ3|1|LO|U|76
6ZJ3|1|LO|A|77
6ZJ3|1|LO|C|78
*
6ZJ3|1|LO|G|98
6ZJ3|1|LO|G|99
6ZJ3|1|LO|A|100
6ZJ3|1|LO|A|101
6ZJ3|1|LO|C|102
6ZJ3|1|LO|A|103
6ZJ3|1|LO|C|104
Current chains
- Chain LO
- 5S rRNA
Nearby chains
- Chain L7
- Ribosomal protein eLEgr3
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain LF
- Large subunit ribosomal RNA; LSU rRNA
- Chain Lc
- 60S ribosomal protein L10
- Chain Ld
- Ribosomal protein uL18
- Chain Lg
- Ribosomal protein eL20
- Chain Lh
- Ribosomal protein eL21
- Chain Lr
- Ribosomal protein uL30
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