IL_6ZJ3_196
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- GGUG*CAC
- Length
- 7 nucleotides
- Bulged bases
- 6ZJ3|1|LO|U|84
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_196 not in the Motif Atlas
- Homologous match to IL_5TBW_378
- Geometric discrepancy: 0.1151
- The information below is about IL_5TBW_378
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
6ZJ3|1|LO|G|82
6ZJ3|1|LO|G|83
6ZJ3|1|LO|U|84
6ZJ3|1|LO|G|85
*
6ZJ3|1|LO|C|92
6ZJ3|1|LO|A|93
6ZJ3|1|LO|C|94
Current chains
- Chain LO
- 5S rRNA
Nearby chains
- Chain LF
- Large subunit ribosomal RNA; LSU rRNA
- Chain Lc
- 60S ribosomal protein L10
- Chain Lg
- Ribosomal protein eL20
- Chain Lr
- Ribosomal protein uL30
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