IL_6ZJ3_197

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

UCA(PSU)(A2M)U*G(OMU)A(OMU)A

Length

11 nucleotides

Bulged bases

6ZJ3|1|S1|C|25, 6ZJ3|1|S1|A|703

QA status

Modified nucleotides: PSU, A2M, OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_197 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3231

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

6ZJ3|1|S1|U|24
6ZJ3|1|S1|C|25
6ZJ3|1|S1|A|26
6ZJ3|1|S1|PSU|27
6ZJ3|1|S1|A2M|28
6ZJ3|1|S1|U|29
*
6ZJ3|1|S1|G|701
6ZJ3|1|S1|OMU|702
6ZJ3|1|S1|A|703
6ZJ3|1|S1|OMU|704
6ZJ3|1|S1|A|705

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SD

Ribosomal protein uS4

Chain SP

Ribosomal protein uS12