IL_6ZJ3_198

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

U(OMC)A(A2M)G*CGACGA

Length

11 nucleotides

Bulged bases

6ZJ3|1|S1|A|569

QA status

Modified nucleotides: OMC, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_198 not in the Motif Atlas

Geometric match to IL_4V88_386

Geometric discrepancy: 0.2148

The information below is about IL_4V88_386

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

6ZJ3|1|S1|U|37
6ZJ3|1|S1|OMC|38
6ZJ3|1|S1|A|39
6ZJ3|1|S1|A2M|40
6ZJ3|1|S1|G|41
*
6ZJ3|1|S1|C|567
6ZJ3|1|S1|G|568
6ZJ3|1|S1|A|569
6ZJ3|1|S1|C|570
6ZJ3|1|S1|G|571
6ZJ3|1|S1|A|572

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SD

Ribosomal protein uS4

Chain SE

Ribosomal protein eS4

Chain SZ

Ribosomal protein eS24