IL_6ZJ3_202

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GC(A2M)G*CU(PSU)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_202 not in the Motif Atlas

Homologous match to IL_4V88_391

Geometric discrepancy: 0.5387

The information below is about IL_4V88_391

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6ZJ3|1|S1|G|108
6ZJ3|1|S1|C|109
6ZJ3|1|S1|A2M|110
6ZJ3|1|S1|G|111
*
6ZJ3|1|S1|C|401
6ZJ3|1|S1|U|402
6ZJ3|1|S1|PSU|403
6ZJ3|1|S1|C|404

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SE

Ribosomal protein eS4

Chain SK

Ribosomal protein eS8

Chain SU

Ribosomal protein uS17