IL_6ZJ3_207

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GGACAUC*GCUAA(OMU)AC

Length

15 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_207 not in the Motif Atlas

Geometric match to IL_5J7L_012

Geometric discrepancy: 0.2046

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

6ZJ3|1|S1|G|159
6ZJ3|1|S1|G|160
6ZJ3|1|S1|A|161
6ZJ3|1|S1|C|162
6ZJ3|1|S1|A|163
6ZJ3|1|S1|U|164
6ZJ3|1|S1|C|165
*
6ZJ3|1|S1|G|181
6ZJ3|1|S1|C|182
6ZJ3|1|S1|U|183
6ZJ3|1|S1|A|184
6ZJ3|1|S1|A|185
6ZJ3|1|S1|OMU|186
6ZJ3|1|S1|A|187
6ZJ3|1|S1|C|188

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SG

Ribosomal protein eS6

Chain SZ

Ribosomal protein eS24