IL_6ZJ3_215

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GAG*CGAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_215 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.0994

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6ZJ3|1|S1|G|460
6ZJ3|1|S1|A|461
6ZJ3|1|S1|G|462
*
6ZJ3|1|S1|C|473
6ZJ3|1|S1|G|474
6ZJ3|1|S1|A|475
6ZJ3|1|S1|U|476
6ZJ3|1|S1|U|477
6ZJ3|1|S1|C|478

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SD

Ribosomal protein uS4

Chain SE

Ribosomal protein eS4

Chain SP

Ribosomal protein uS12