IL_6ZJ3_221

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_221 not in the Motif Atlas

Geometric match to IL_4V88_413

Geometric discrepancy: 0.1072

The information below is about IL_4V88_413

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

10

Unit IDs

6ZJ3|1|S1|A|654
6ZJ3|1|S1|G|655
6ZJ3|1|S1|G|656
6ZJ3|1|S1|G|657
6ZJ3|1|S1|C|658
6ZJ3|1|S1|A|659
6ZJ3|1|S1|A|660
6ZJ3|1|S1|G|661
*
6ZJ3|1|S1|C|691
6ZJ3|1|S1|U|692

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SD

Ribosomal protein uS4

Chain SF

Ribosomal protein uS5

Chain Se

Ribosomal protein eS30