IL_6ZJ3_240

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

6ZJ3|1|S1|A|1085

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_240 not in the Motif Atlas

Geometric match to IL_7RQB_073

Geometric discrepancy: 0.1771

The information below is about IL_7RQB_073

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_88739.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

6ZJ3|1|S1|A|1026
6ZJ3|1|S1|C|1027
*
6ZJ3|1|S1|G|1084
6ZJ3|1|S1|A|1085
6ZJ3|1|S1|A|1086
6ZJ3|1|S1|U|1087

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SI

Ribosomal protein eS7

Chain SJ

Ribosomal protein uS8

Chain SP

Ribosomal protein uS12

Chain SU

Ribosomal protein uS17