IL_6ZJ3_246

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GG*CGUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_246 not in the Motif Atlas

Geometric match to IL_6N5P_003

Geometric discrepancy: 0.0922

The information below is about IL_6N5P_003

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

6ZJ3|1|S1|G|1262
6ZJ3|1|S1|G|1263
*
6ZJ3|1|S1|C|1359
6ZJ3|1|S1|G|1360
6ZJ3|1|S1|U|1361
6ZJ3|1|S1|C|1362

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SJ

Ribosomal protein uS8

Chain ST

Ribosomal protein uS15

Chain Sc

Ribosomal protein eS27