IL_6ZJ3_247

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

ACU*ACGU

Length

7 nucleotides

Bulged bases

6ZJ3|1|S1|G|1356

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_247 not in the Motif Atlas

Geometric match to IL_3TD0_005

Geometric discrepancy: 0.2255

The information below is about IL_3TD0_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6ZJ3|1|S1|A|1265
6ZJ3|1|S1|C|1266
6ZJ3|1|S1|U|1267
*
6ZJ3|1|S1|A|1354
6ZJ3|1|S1|C|1355
6ZJ3|1|S1|G|1356
6ZJ3|1|S1|U|1357

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SI

Ribosomal protein eS7

Chain SJ

Ribosomal protein uS8

Chain ST

Ribosomal protein uS15

Chain Sc

Ribosomal protein eS27