IL_6ZJ3_252

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GGA*UGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_252 not in the Motif Atlas

Geometric match to IL_3R1C_012

Geometric discrepancy: 0.0922

The information below is about IL_3R1C_012

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

6ZJ3|1|S1|G|1287
6ZJ3|1|S1|G|1288
6ZJ3|1|S1|A|1289
*
6ZJ3|1|S1|U|1317
6ZJ3|1|S1|G|1318
6ZJ3|1|S1|C|1319

Current chains

Chain S1

18S rRNA

Nearby chains

Chain LP

Ribosomal protein uL2

Chain SA

Ribosomal protein eS1

Chain SO

Ribosomal protein uS11