IL_6ZJ3_253

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GCCAG*CUUAGAUC

Length

13 nucleotides

Bulged bases

6ZJ3|1|S1|A|1310

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_253 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.158

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

6ZJ3|1|S1|G|1292
6ZJ3|1|S1|C|1293
6ZJ3|1|S1|C|1294
6ZJ3|1|S1|A|1295
6ZJ3|1|S1|G|1296
*
6ZJ3|1|S1|C|1307
6ZJ3|1|S1|U|1308
6ZJ3|1|S1|U|1309
6ZJ3|1|S1|A|1310
6ZJ3|1|S1|G|1311
6ZJ3|1|S1|A|1312
6ZJ3|1|S1|U|1313
6ZJ3|1|S1|C|1314

Current chains

Chain S1

18S rRNA

Nearby chains

Chain LH

Large subunit ribosomal RNA; LSU rRNA

Chain SA

Ribosomal protein eS1

Chain SO

Ribosomal protein uS11