IL_6ZJ3_258
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- CGG*CCUGUGG
- Length
- 10 nucleotides
- Bulged bases
- 6ZJ3|1|S1|C|1506, 6ZJ3|1|S1|G|1508, 6ZJ3|1|S1|G|1510
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_258 not in the Motif Atlas
- Homologous match to IL_4V88_437
- Geometric discrepancy: 0.1627
- The information below is about IL_4V88_437
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62898.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6ZJ3|1|S1|C|1433
6ZJ3|1|S1|G|1434
6ZJ3|1|S1|G|1435
*
6ZJ3|1|S1|C|1505
6ZJ3|1|S1|C|1506
6ZJ3|1|S1|U|1507
6ZJ3|1|S1|G|1508
6ZJ3|1|S1|U|1509
6ZJ3|1|S1|G|1510
6ZJ3|1|S1|G|1511
Current chains
- Chain S1
- 18S rRNA
Nearby chains
- Chain SF
- Ribosomal protein uS5
- Chain SJ
- Ribosomal protein uS8
- Chain SP
- Ribosomal protein uS12
- Chain ST
- Ribosomal protein uS15
- Chain SU
- Ribosomal protein uS17
- Chain SY
- Ribosomal protein eS21
- Chain Sc
- Ribosomal protein eS27
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