IL_6ZJ3_259
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- GGAGUACUG*CUGAAAC
- Length
- 16 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_259 not in the Motif Atlas
- Geometric match to IL_6CZR_146
- Geometric discrepancy: 0.1285
- The information below is about IL_6CZR_146
- Detailed Annotation
- 9x7 Sarcin-Ricin with inserted C; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_68633.1
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
6ZJ3|1|S1|G|1521
6ZJ3|1|S1|G|1522
6ZJ3|1|S1|A|1523
6ZJ3|1|S1|G|1524
6ZJ3|1|S1|U|1525
6ZJ3|1|S1|A|1526
6ZJ3|1|S1|C|1527
6ZJ3|1|S1|U|1528
6ZJ3|1|S1|G|1529
*
6ZJ3|1|S1|C|1538
6ZJ3|1|S1|U|1539
6ZJ3|1|S1|G|1540
6ZJ3|1|S1|A|1541
6ZJ3|1|S1|A|1542
6ZJ3|1|S1|A|1543
6ZJ3|1|S1|C|1544
Current chains
- Chain S1
- 18S rRNA
Nearby chains
- Chain L3
- Ribosomal protein eL41
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain SP
- Ribosomal protein uS12
Coloring options: