IL_6ZJ3_262

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

AAU*A(PSU)U

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_262 not in the Motif Atlas

Geometric match to IL_2O3X_001

Geometric discrepancy: 0.1205

The information below is about IL_2O3X_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6ZJ3|1|S1|A|1561
6ZJ3|1|S1|A|1562
6ZJ3|1|S1|U|1563
*
6ZJ3|1|S1|A|2128
6ZJ3|1|S1|PSU|2129
6ZJ3|1|S1|U|2130

Current chains

Chain S1

18S rRNA

Nearby chains

Chain L3

Ribosomal protein eL41

Chain S5

A-site tRNA

Chain SF

Ribosomal protein uS5

Chain Sb

Ribosomal protein eS26