IL_6ZJ3_269

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

ACA*U(PSU)U

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_269 not in the Motif Atlas

Homologous match to IL_4V88_448

Geometric discrepancy: 0.4295

The information below is about IL_4V88_448

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30342.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

10

Unit IDs

6ZJ3|1|S1|A|1644
6ZJ3|1|S1|C|1645
6ZJ3|1|S1|A|1646
*
6ZJ3|1|S1|U|1659
6ZJ3|1|S1|PSU|1660
6ZJ3|1|S1|U|1661

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SS

Ribosomal protein uS14

Chain SW

Ribosomal protein uS19

Chain Sf

Ribosomal protein eS31