IL_6ZJ3_273

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

6ZJ3|1|S1|A|1912

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_273 not in the Motif Atlas

Homologous match to IL_4V88_452

Geometric discrepancy: 0.1902

The information below is about IL_4V88_452

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6ZJ3|1|S1|C|1690
6ZJ3|1|S1|G|1691
*
6ZJ3|1|S1|C|1911
6ZJ3|1|S1|A|1912
6ZJ3|1|S1|G|1913

Current chains

Chain S1

18S rRNA

Nearby chains

Chain S2

Transfer RNA; tRNA

Chain S5

A-site tRNA

Chain SC

Ribosomal protein uS3

Chain SF

Ribosomal protein uS5

Chain SL

Ribosomal protein uS9

Chain SM

Ribosomal protein uS10

Chain SS

Ribosomal protein uS14