IL_6ZJ3_274

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

UGG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_274 not in the Motif Atlas

Homologous match to IL_4V88_453

Geometric discrepancy: 0.0822

The information below is about IL_4V88_453

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

6ZJ3|1|S1|U|1700
6ZJ3|1|S1|G|1701
6ZJ3|1|S1|G|1702
*
6ZJ3|1|S1|C|1733
6ZJ3|1|S1|G|1734
6ZJ3|1|S1|A|1735

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SB

Ribosomal protein uS2

Chain SC

Ribosomal protein uS3

Chain SF

Ribosomal protein uS5

Chain SV

Ribosomal protein eS17