IL_6ZJ3_276

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CCCA*UCUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_276 not in the Motif Atlas

Geometric match to IL_4XW0_002

Geometric discrepancy: 0.3979

The information below is about IL_4XW0_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

41

Unit IDs

6ZJ3|1|S1|C|1751
6ZJ3|1|S1|C|1752
6ZJ3|1|S1|C|1753
6ZJ3|1|S1|A|1754
*
6ZJ3|1|S1|U|1862
6ZJ3|1|S1|C|1863
6ZJ3|1|S1|U|1864
6ZJ3|1|S1|G|1865

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SL

Ribosomal protein uS9

Chain SM

Ribosomal protein uS10

Chain Sh

RACK1