IL_6ZJ3_277

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

ACUA*UUCU

Length

8 nucleotides

Bulged bases

6ZJ3|1|S1|C|1755, 6ZJ3|1|S1|U|1756

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_277 not in the Motif Atlas

Homologous match to IL_4V88_456

Geometric discrepancy: 0.2306

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

6ZJ3|1|S1|A|1754
6ZJ3|1|S1|C|1755
6ZJ3|1|S1|U|1756
6ZJ3|1|S1|A|1757
*
6ZJ3|1|S1|U|1859
6ZJ3|1|S1|U|1860
6ZJ3|1|S1|C|1861
6ZJ3|1|S1|U|1862

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SL

Ribosomal protein uS9

Chain SM

Ribosomal protein uS10