IL_6ZJ3_282
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- CUG*UGCAUG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_282 not in the Motif Atlas
- Homologous match to IL_4V88_458
- Geometric discrepancy: 0.2282
- The information below is about IL_4V88_458
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- Major groove platform
- Motif group
- IL_58032.1
- Basepair signature
- cWW-tWH-cWW-L-L-R
- Number of instances in this motif group
- 2
Unit IDs
6ZJ3|1|S1|C|1871
6ZJ3|1|S1|U|1872
6ZJ3|1|S1|G|1873
*
6ZJ3|1|S1|U|1892
6ZJ3|1|S1|G|1893
6ZJ3|1|S1|C|1894
6ZJ3|1|S1|A|1895
6ZJ3|1|S1|U|1896
6ZJ3|1|S1|G|1897
Current chains
- Chain S1
- 18S rRNA
Nearby chains
- Chain SH
- Ribosomal protein uS7
- Chain SL
- Ribosomal protein uS9
- Chain SV
- Ribosomal protein eS17
- Chain Sh
- RACK1
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