IL_6ZJ3_283

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

G(PSU)C*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_283 not in the Motif Atlas

Geometric match to IL_2ET8_001

Geometric discrepancy: 0.2217

The information below is about IL_2ET8_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6ZJ3|1|S1|G|1959
6ZJ3|1|S1|PSU|1960
6ZJ3|1|S1|C|1961
*
6ZJ3|1|S1|G|2034
6ZJ3|1|S1|A|2035
6ZJ3|1|S1|C|2036

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SH

Ribosomal protein uS7

Chain SR

Ribosomal protein uS13

Chain SX

Ribosomal protein eS19

Chain Sa

Ribosomal protein eS25