IL_6ZJ3_287

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GCC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_287 not in the Motif Atlas

Geometric match to IL_4KR9_001

Geometric discrepancy: 0.1442

The information below is about IL_4KR9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

6ZJ3|1|S1|G|2091
6ZJ3|1|S1|C|2092
6ZJ3|1|S1|C|2093
*
6ZJ3|1|S1|G|2109
6ZJ3|1|S1|A|2110
6ZJ3|1|S1|C|2111

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SH

Ribosomal protein uS7

Chain SL

Ribosomal protein uS9

Chain SM

Ribosomal protein uS10

Chain SS

Ribosomal protein uS14

Chain SX

Ribosomal protein eS19