IL_6ZJ3_291
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- CGU*AAAG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_291 not in the Motif Atlas
- Geometric match to IL_3C3Z_002
- Geometric discrepancy: 0.2365
- The information below is about IL_3C3Z_002
- Detailed Annotation
- Decoding loop related
- Broad Annotation
- Decoding loop related
- Motif group
- IL_53541.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
6ZJ3|1|S1|C|2147
6ZJ3|1|S1|G|2148
6ZJ3|1|S1|U|2149
*
6ZJ3|1|S1|A|2260
6ZJ3|1|S1|A|2261
6ZJ3|1|S1|A|2262
6ZJ3|1|S1|G|2263
Current chains
- Chain S1
- 18S rRNA
Nearby chains
- Chain L3
- Ribosomal protein eL41
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain S2
- Transfer RNA; tRNA
- Chain S5
- A-site tRNA
- Chain SP
- Ribosomal protein uS12
- Chain Se
- Ribosomal protein eS30
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