IL_6ZJ3_300
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- (PSU)GG*CAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_300 not in the Motif Atlas
- Geometric match to IL_8AF0_002
- Geometric discrepancy: 0.341
- The information below is about IL_8AF0_002
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_10892.2
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 58
Unit IDs
6ZJ3|1|LC|PSU|480
6ZJ3|1|LC|G|481
6ZJ3|1|LC|G|482
*
6ZJ3|1|LC|C|493
6ZJ3|1|LC|A|494
6ZJ3|1|LC|G|495
Current chains
- Chain LC
- LSU rRNA chain 2
Nearby chains
- Chain L4
- Ribosomal protein eL43
- Chain LB
- Large subunit ribosomal RNA; LSU rRNA
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- Large subunit ribosomal RNA; LSU rRNA
- Chain Lb
- Ribosomal protein eL15
- Chain Lx
- Ribosomal protein eL36
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