IL_6ZJ3_316

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

C(PSU)U*(OMG)CG

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_316 not in the Motif Atlas

Geometric match to IL_4PDQ_004

Geometric discrepancy: 0.2662

The information below is about IL_4PDQ_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

6ZJ3|1|LF|C|1585
6ZJ3|1|LF|PSU|1586
6ZJ3|1|LF|U|1587
*
6ZJ3|1|LF|OMG|1662
6ZJ3|1|LF|C|1663
6ZJ3|1|LF|G|1664

Current chains

Chain LF

LSU rRNA chain 5

Nearby chains

Chain Lc

60S ribosomal protein L10

Chain Lg

Ribosomal protein eL20

Chain Lh

Ribosomal protein eL21