IL_6ZJ3_319

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

G(OMG)AG*C(PSU)

Length

6 nucleotides

Bulged bases

6ZJ3|1|LF|OMG|1856, 6ZJ3|1|LF|A|1857

QA status

Modified nucleotides: OMG, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_319 not in the Motif Atlas

Geometric match to IL_4V9F_088

Geometric discrepancy: 0.308

The information below is about IL_4V9F_088

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.2

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

6ZJ3|1|LF|G|1855
6ZJ3|1|LF|OMG|1856
6ZJ3|1|LF|A|1857
6ZJ3|1|LF|G|1858
*
6ZJ3|1|LF|C|1875
6ZJ3|1|LF|PSU|1876

Current chains

Chain LF

LSU rRNA chain 5

Nearby chains

Chain LC

Large subunit ribosomal RNA; LSU rRNA

Chain LN

LSU rRNA chain 13

Chain Li

Ribosomal protein uL22

Chain Lt

Ribosomal protein eL31