IL_6ZJ3_324
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- (OMC)(A2M)G*U(OMC)G
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMC, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_324 not in the Motif Atlas
- Geometric match to IL_6IA2_005
- Geometric discrepancy: 0.14
- The information below is about IL_6IA2_005
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.5
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 238
Unit IDs
6ZJ3|1|LH|OMC|2348
6ZJ3|1|LH|A2M|2349
6ZJ3|1|LH|G|2350
*
6ZJ3|1|LH|U|2831
6ZJ3|1|LH|OMC|2832
6ZJ3|1|LH|G|2833
Current chains
- Chain LH
- LSU rRNA chain 7
Nearby chains
- Chain LE
- Large subunit ribosomal RNA; LSU rRNA
- Chain LF
- Large subunit ribosomal RNA; LSU rRNA
- Chain LJ
- Large subunit ribosomal RNA; LSU rRNA
- Chain LN
- LSU rRNA chain 13
- Chain LQ
- Ribosomal protein uL3
- Chain Lt
- Ribosomal protein eL31
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