IL_6ZJ3_329
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- C(5MC)A(A2M)(A2M)UGCCUC(OMG)*CGCG
- Length
- 16 nucleotides
- Bulged bases
- 6ZJ3|1|LH|A2M|2769, 6ZJ3|1|LH|C|2775, 6ZJ3|1|LH|C|2794
- QA status
- Modified nucleotides: 5MC, A2M, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_329 not in the Motif Atlas
- Homologous match to IL_8C3A_095
- Geometric discrepancy: 0.1835
- The information below is about IL_8C3A_095
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_66080.1
- Basepair signature
- cWW-cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
6ZJ3|1|LH|C|2765
6ZJ3|1|LH|5MC|2766
6ZJ3|1|LH|A|2767
6ZJ3|1|LH|A2M|2768
6ZJ3|1|LH|A2M|2769
6ZJ3|1|LH|U|2770
6ZJ3|1|LH|G|2771
6ZJ3|1|LH|C|2772
6ZJ3|1|LH|C|2773
6ZJ3|1|LH|U|2774
6ZJ3|1|LH|C|2775
6ZJ3|1|LH|OMG|2776
*
6ZJ3|1|LH|C|2792
6ZJ3|1|LH|G|2793
6ZJ3|1|LH|C|2794
6ZJ3|1|LH|G|2795
Current chains
- Chain LH
- LSU rRNA chain 7
Nearby chains
- Chain L3
- Ribosomal protein eL41
- Chain LI
- Large subunit ribosomal RNA; LSU rRNA
- Chain S1
- Small subunit ribosomal RNA; SSU rRNA
- Chain S2
- Transfer RNA; tRNA
Coloring options: