IL_6ZJ3_341

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

(OMC)UC*G(PSU)G(A2M)G

Length

8 nucleotides

Bulged bases

6ZJ3|1|LI|G|3532, 6ZJ3|1|LI|A2M|3533

QA status

Modified nucleotides: OMC, PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_341 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.2906

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6ZJ3|1|LI|OMC|3465
6ZJ3|1|LI|U|3466
6ZJ3|1|LI|C|3467
*
6ZJ3|1|LI|G|3530
6ZJ3|1|LI|PSU|3531
6ZJ3|1|LI|G|3532
6ZJ3|1|LI|A2M|3533
6ZJ3|1|LI|G|3534

Current chains

Chain LI

LSU rRNA chain 8

Nearby chains

Chain LH

Large subunit ribosomal RNA; LSU rRNA

Chain LQ

Ribosomal protein uL3

Chain LY

Ribosomal protein uL14