IL_6ZJ3_353

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

CGU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_353 not in the Motif Atlas

Geometric match to IL_8C3A_472

Geometric discrepancy: 0.2392

The information below is about IL_8C3A_472

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

6ZJ3|1|S1|C|586
6ZJ3|1|S1|G|587
6ZJ3|1|S1|U|588
*
6ZJ3|1|S1|A|604
6ZJ3|1|S1|U|605
6ZJ3|1|S1|G|606

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SD

Ribosomal protein uS4

Chain Se

Ribosomal protein eS30