IL_6ZJ3_361

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

G(PSU)(OMC)*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_361 not in the Motif Atlas

Geometric match to IL_4PCJ_002

Geometric discrepancy: 0.2368

The information below is about IL_4PCJ_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_68118.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

31

Unit IDs

6ZJ3|1|S1|G|1623
6ZJ3|1|S1|PSU|1624
6ZJ3|1|S1|OMC|1625
*
6ZJ3|1|S1|G|1933
6ZJ3|1|S1|U|1934
6ZJ3|1|S1|C|1935

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SN

Ribosomal protein eS10

Chain SS

Ribosomal protein uS14

Chain SW

Ribosomal protein uS19

Chain Sf

Ribosomal protein eS31