IL_6ZJ3_365

3D structure

PDB id

6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.15 Å

Loop

Sequence

GAG*CUCC

Length

7 nucleotides

Bulged bases

6ZJ3|1|S1|C|1849

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZJ3_365 not in the Motif Atlas

Homologous match to IL_8C3A_464

Geometric discrepancy: 0.3821

The information below is about IL_8C3A_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

6ZJ3|1|S1|G|1762
6ZJ3|1|S1|A|1763
6ZJ3|1|S1|G|1764
*
6ZJ3|1|S1|C|1847
6ZJ3|1|S1|U|1848
6ZJ3|1|S1|C|1849
6ZJ3|1|S1|C|1850

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SL

Ribosomal protein uS9

Chain SX

Ribosomal protein eS19