IL_6ZJ3_371
3D structure
- PDB id
- 6ZJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.15 Å
Loop
- Sequence
- (PSU)UUCCA*UGAAG
- Length
- 11 nucleotides
- Bulged bases
- 6ZJ3|1|LJ|U|3646, 6ZJ3|1|LJ|C|3648
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZJ3_371 not in the Motif Atlas
- Homologous match to IL_8CRE_127
- Geometric discrepancy: 0.1789
- The information below is about IL_8CRE_127
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_21001.1
- Basepair signature
- cWW-L-R-tHW-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
6ZJ3|1|LJ|PSU|3644
6ZJ3|1|LJ|U|3645
6ZJ3|1|LJ|U|3646
6ZJ3|1|LJ|C|3647
6ZJ3|1|LJ|C|3648
6ZJ3|1|LJ|A|3649
*
6ZJ3|1|LJ|U|3674
6ZJ3|1|LJ|G|3675
6ZJ3|1|LJ|A|3676
6ZJ3|1|LJ|A|3677
6ZJ3|1|LJ|G|3678
Current chains
- Chain LJ
- LSU rRNA chain 9
Nearby chains
- Chain LH
- Large subunit ribosomal RNA; LSU rRNA
- Chain LM
- LSU rRNA chain 12
- Chain LN
- LSU rRNA chain 13
- Chain LQ
- Ribosomal protein uL3
- Chain Lm
- Ribosomal protein eL24
- Chain Lt
- Ribosomal protein eL31
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