Motif IL_21001.1 Version IL_21001.1 of this group appears in releases 3.95 to 3.96
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-7 | 5-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5V1K_002 | 5V1K | 0.6341 | 1 | A+B | RNA (12-mer) | C | 103 | G | 104 | A | 105 | A | 106 | 5BU | 107||A | * | A | 206 | 5BU | 207 | A | 209 | G | 210 | cWW | tSH | cWW | ||
| 2 | IL_8P9A_346 | 8P9A | 0.0000 | 2 | UAA/GAN related (H) | AR | LSU rRNA | C | 3084 | G | 3085 | A | 3086 | A | 3087 | G | 3088 | * | U | 3054 | U | 3055 | U | 3057 | G | 3059 | cWW | ntHW | cWW | |
| 3 | IL_8CRE_127 | 8CRE | 0.1312 | 2 | UAA/GAN related (H) | 1 | LSU rRNA | C | 3056 | G | 3057 | A | 3058 | A | 3059 | G | 3060 | * | U | 3026 | U | 3027 | U | 3029 | G | 3031 | cWW | tSW | tHW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAAG*UUUUUG | 2 |
| A(5BU)(8RJ)AG*CGAA(5BU) | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAA*UUUU | 2 |
| (5BU)(8RJ)A*GAA | 1 |
- Annotations
-
- UAA/GAN related (H) (2)
- (1)
- Basepair signature
- cWW-L-R-tHW-L-cWW
- Heat map statistics
- Min 0.13 | Avg 0.39 | Max 0.98
Coloring options: