IL_6ZLW_014

3D structure

PDB id

6ZLW (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human 40S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6ZLW|1|2|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZLW_014 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.1119

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6ZLW|1|2|G|145
6ZLW|1|2|G|146
6ZLW|1|2|A|147
6ZLW|1|2|U|148
6ZLW|1|2|A|149
6ZLW|1|2|A|150
6ZLW|1|2|C|151
*
6ZLW|1|2|G|167
6ZLW|1|2|C|168
6ZLW|1|2|U|169
6ZLW|1|2|A|170
6ZLW|1|2|A|171
6ZLW|1|2|U|172
6ZLW|1|2|A|173
6ZLW|1|2|C|174

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6

Chain Y

40S ribosomal protein S24