3D structure

PDB id
6ZLW (explore in PDB, NAKB, or RNA 3D Hub)
Description
SARS-CoV-2 Nsp1 bound to the human 40S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
2.6 Å

Loop

Sequence
AGGGCAAG*CU
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ZLW_033 not in the Motif Atlas
Geometric match to IL_4V88_413
Geometric discrepancy: 0.0856
The information below is about IL_4V88_413
Detailed Annotation
SSU/LSU pseudoknot
Broad Annotation
No text annotation
Motif group
IL_41203.1
Basepair signature
cWW-L-cWW-L-L-R-cSH
Number of instances in this motif group
10

Unit IDs

6ZLW|1|2|A|599
6ZLW|1|2|G|600
6ZLW|1|2|G|601
6ZLW|1|2|G|602
6ZLW|1|2|C|603
6ZLW|1|2|A|604
6ZLW|1|2|A|605
6ZLW|1|2|G|606
*
6ZLW|1|2|C|636
6ZLW|1|2|U|637

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain D
40S ribosomal protein S2
Chain J
40S ribosomal protein S9
Chain e
40S ribosomal protein S30
Chain i
Non-structural protein 1

Coloring options:


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