IL_6ZLW_051

3D structure

PDB id

6ZLW (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human 40S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

6ZLW|1|2|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZLW_051 not in the Motif Atlas

Homologous match to IL_4V88_434

Geometric discrepancy: 0.1829

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

6ZLW|1|2|G|952
6ZLW|1|2|C|953
6ZLW|1|2|U|954
6ZLW|1|2|A|955
6ZLW|1|2|G|956
*
6ZLW|1|2|C|967
6ZLW|1|2|U|968
6ZLW|1|2|U|969
6ZLW|1|2|G|970
6ZLW|1|2|G|971
6ZLW|1|2|A|972
6ZLW|1|2|C|973
6ZLW|1|2|C|974

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein S3a

Chain P

40S ribosomal protein S14