IL_6ZLW_058

3D structure

PDB id

6ZLW (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human 40S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZLW_058 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.0729

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

6ZLW|1|2|G|1168
6ZLW|1|2|G|1169
6ZLW|1|2|A|1170
6ZLW|1|2|G|1171
6ZLW|1|2|U|1172
6ZLW|1|2|A|1173
6ZLW|1|2|U|1174
6ZLW|1|2|G|1175
*
6ZLW|1|2|U|1186
6ZLW|1|2|G|1187
6ZLW|1|2|A|1188
6ZLW|1|2|A|1189
6ZLW|1|2|A|1190
6ZLW|1|2|C|1191

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain X

40S ribosomal protein S23

Chain h

60S ribosomal protein L41