IL_6ZLW_086

3D structure

PDB id

6ZLW (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human 40S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZLW_086 not in the Motif Atlas

Homologous match to IL_4V88_468

Geometric discrepancy: 0.1894

The information below is about IL_4V88_468

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6ZLW|1|2|C|1717
6ZLW|1|2|G|1718
6ZLW|1|2|A|1719
6ZLW|1|2|U|1720
*
6ZLW|1|2|A|1813
6ZLW|1|2|G|1814
6ZLW|1|2|A|1815
6ZLW|1|2|G|1816

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain h

60S ribosomal protein L41