IL_6ZM5_045
3D structure
- PDB id
- 6ZM5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- AUC*GGUUU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ZM5_045 not in the Motif Atlas
- Homologous match to IL_4WF9_092
- Geometric discrepancy: 0.1783
- The information below is about IL_4WF9_092
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform with extra cWW
- Motif group
- IL_36931.2
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 24
Unit IDs
6ZM5|1|A|A|2946
6ZM5|1|A|U|2947
6ZM5|1|A|C|2948
*
6ZM5|1|A|G|2976
6ZM5|1|A|G|2977
6ZM5|1|A|U|2978
6ZM5|1|A|U|2979
6ZM5|1|A|U|2980
Current chains
- Chain A
- 16S mitochondrial rRNA
Nearby chains
- Chain I
- 39S ribosomal protein L10, mitochondrial
- Chain N
- 39S ribosomal protein L16, mitochondrial
- Chain W
- 39S ribosomal protein L27, mitochondrial
- Chain o
- Ribosomal protein 63, mitochondrial
- Chain w
- Transfer RNA; tRNA
Coloring options: