IL_6ZM5_082

3D structure

PDB id

6ZM5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GG*UAC

Length

5 nucleotides

Bulged bases

6ZM5|1|AA|A|1478

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZM5_082 not in the Motif Atlas

Geometric match to IL_6CZR_147

Geometric discrepancy: 0.125

The information below is about IL_6CZR_147

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

6ZM5|1|AA|G|1175
6ZM5|1|AA|G|1176
*
6ZM5|1|AA|U|1477
6ZM5|1|AA|A|1478
6ZM5|1|AA|C|1479

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain A3

Aurora kinase A-interacting protein

Chain AD

28S ribosomal protein S5, mitochondrial