IL_6ZM5_108

3D structure

PDB id

6ZM5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with OXA1L, mRNA, A/A tRNA, P/P tRNA and nascent polypeptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

UAU*AA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZM5_108 not in the Motif Atlas

Geometric match to IL_8VTW_003

Geometric discrepancy: 0.2747

The information below is about IL_8VTW_003

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

6ZM5|1|A|U|2744
6ZM5|1|A|A|2745
6ZM5|1|A|U|2746
*
6ZM5|1|A|A|2802
6ZM5|1|A|A|2803

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain X

39S ribosomal protein L28, mitochondrial