IL_6ZM7_030

3D structure

PDB id

6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGCCCGG*UCC

Length

10 nucleotides

Bulged bases

6ZM7|1|L5|C|501, 6ZM7|1|L5|C|502, 6ZM7|1|L5|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZM7_030 not in the Motif Atlas

Geometric match to IL_3TD0_002

Geometric discrepancy: 0.3165

The information below is about IL_3TD0_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6ZM7|1|L5|G|499
6ZM7|1|L5|G|500
6ZM7|1|L5|C|501
6ZM7|1|L5|C|502
6ZM7|1|L5|C|503
6ZM7|1|L5|G|504
6ZM7|1|L5|G|505
*
6ZM7|1|L5|U|653
6ZM7|1|L5|C|654
6ZM7|1|L5|C|655

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LQ

60S ribosomal protein L18