IL_6ZM7_043

3D structure

PDB id

6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUC*GCCCG

Length

8 nucleotides

Bulged bases

6ZM7|1|L5|C|1214, 6ZM7|1|L5|C|1215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZM7_043 not in the Motif Atlas

Geometric match to IL_6IA2_003

Geometric discrepancy: 0.3542

The information below is about IL_6IA2_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

6ZM7|1|L5|C|1082
6ZM7|1|L5|U|1083
6ZM7|1|L5|C|1084
*
6ZM7|1|L5|G|1213
6ZM7|1|L5|C|1214
6ZM7|1|L5|C|1215
6ZM7|1|L5|C|1216
6ZM7|1|L5|G|1217

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LF

60S ribosomal protein L7

Chain Lb

60S ribosomal protein L29