IL_6ZM7_083

3D structure

PDB id

6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GACCCCAGAAAA*UGAAAAUGGAUGGCGC

Length

28 nucleotides

Bulged bases

6ZM7|1|L5|C|1935, 6ZM7|1|L5|A|2041

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZM7_083 not in the Motif Atlas

Geometric match to IL_5TBW_052

Geometric discrepancy: 0.1723

The information below is about IL_5TBW_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53762.1

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6ZM7|1|L5|G|1933
6ZM7|1|L5|A|1934
6ZM7|1|L5|C|1935
6ZM7|1|L5|C|1936
6ZM7|1|L5|C|1937
6ZM7|1|L5|C|1938
6ZM7|1|L5|A|1939
6ZM7|1|L5|G|1940
6ZM7|1|L5|A|1941
6ZM7|1|L5|A|1942
6ZM7|1|L5|A|1943
6ZM7|1|L5|A|1944
*
6ZM7|1|L5|U|2038
6ZM7|1|L5|G|2039
6ZM7|1|L5|A|2040
6ZM7|1|L5|A|2041
6ZM7|1|L5|A|2042
6ZM7|1|L5|A|2043
6ZM7|1|L5|U|2044
6ZM7|1|L5|G|2045
6ZM7|1|L5|G|2046
6ZM7|1|L5|A|2047
6ZM7|1|L5|U|2048
6ZM7|1|L5|G|2049
6ZM7|1|L5|G|2050
6ZM7|1|L5|C|2051
6ZM7|1|L5|G|2052
6ZM7|1|L5|C|2053

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LB

60S ribosomal protein L3

Chain LI

60S ribosomal protein L10-like

Chain LO

60S ribosomal protein L13a

Chain Lf

60S ribosomal protein L35a

Chain Lm

Ubiquitin-60S ribosomal protein L40