IL_6ZM7_095

3D structure

PDB id

6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAAC*GAA

Length

8 nucleotides

Bulged bases

6ZM7|1|L5|A|2428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZM7_095 not in the Motif Atlas

Geometric match to IL_7A0S_047

Geometric discrepancy: 0.1962

The information below is about IL_7A0S_047

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

6ZM7|1|L5|U|2415
6ZM7|1|L5|G|2416
6ZM7|1|L5|A|2417
6ZM7|1|L5|A|2418
6ZM7|1|L5|C|2419
*
6ZM7|1|L5|G|2427
6ZM7|1|L5|A|2428
6ZM7|1|L5|A|2429

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LP

60S ribosomal protein L17

Chain LR

60S ribosomal protein L19

Chain Ll

60S ribosomal protein L39