IL_6ZM7_111

3D structure

PDB id

6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

6ZM7|1|L5|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ZM7_111 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.0691

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6ZM7|1|L5|C|2867
6ZM7|1|L5|G|2868
6ZM7|1|L5|U|2869
6ZM7|1|L5|A|2870
6ZM7|1|L5|A|2871
6ZM7|1|L5|C|2872
*
6ZM7|1|L5|G|2877
6ZM7|1|L5|G|2878
6ZM7|1|L5|A|2879
6ZM7|1|L5|U|2880
6ZM7|1|L5|A|2881
6ZM7|1|L5|A|2882
6ZM7|1|L5|G|2883

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA