3D structure

PDB id
6ZM7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
SARS-CoV-2 Nsp1 bound to the human CCDC124-80S-EBP1 ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
UCAAAGU*AAUGAAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ZM7_122 not in the Motif Atlas
Homologous match to IL_8C3A_093
Geometric discrepancy: 0.1872
The information below is about IL_8C3A_093
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_36973.8
Basepair signature
cWW-tSH-L-R-L-R-L-R-cWW-cWW
Number of instances in this motif group
3

Unit IDs

6ZM7|1|L5|U|3715
6ZM7|1|L5|C|3716
6ZM7|1|L5|A|3717
6ZM7|1|L5|A|3718
6ZM7|1|L5|A|3719
6ZM7|1|L5|G|3720
6ZM7|1|L5|U|3721
*
6ZM7|1|L5|A|3732
6ZM7|1|L5|A|3733
6ZM7|1|L5|U|3734
6ZM7|1|L5|G|3735
6ZM7|1|L5|A|3736
6ZM7|1|L5|A|3737
6ZM7|1|L5|G|3738

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain CC
Transfer RNA; tRNA
Chain LA
60S ribosomal protein L8
Chain Li
60S ribosomal protein L36
Chain Lo
60S ribosomal protein L36a

Coloring options:


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